SMART Protocols Ontology: Document Module (SP-Document)

SMART Protocols Ontology: Document Module is an ontology designed to represent metadata used to report an experimental protocol. It provides a structured vocabulary for representing experimental protocols, metadata, and related data, supporting both theoretical and experimental research in experimental protocol documentation.

The ontology employs a class-based modeling approach, defining classes for different types of experimental protocols, metadata, and related data, along with properties to describe their characteristics and interactions. Hierarchies are used to organize classes into categories, enabling efficient data retrieval and analysis. SP-Document supports the integration of data from various sources, promoting interoperability and data-driven research in experimental protocol documentation.

Typical applications of SP-Document include the development of new experimental protocol documentation methods, the optimization of experimental protocol management practices, and the integration of diverse datasets to support advanced analytics and knowledge discovery. By providing a standardized vocabulary and framework, SP-Document enhances collaboration and innovation in the field of experimental protocol documentation.

Example Usage: Annotate an experimental protocol with SP-Document terms to specify protocol types, metadata, and related data, enabling semantic search and integration with experimental protocol documentation platforms.

Metrics & Statistics

Graph Statistics

Total Nodes

1489

Total Edges

3044

Root Nodes

18

Leaf Nodes

908
Knowledge Coverage Statistics

Classes

400

Individuals

45

Properties

43
Hierarchical Metrics

Maximum Depth

9

Minimum Depth

0

Average Depth

3.96

Depth Variance

4.49
Breadth Metrics

Maximum Breadth

69

Minimum Breadth

8

Average Breadth

32.80

Breadth Variance

369.36
LLMs4OL Dataset Statistics

Term Types

45

Taxonomic Relations

474

Non-taxonomic Relations

73

Average Terms per Type

2.65

Usage Example

Use the following code to import this ontology programmatically:

from ontolearner.ontology import SPDocument

ontology = SPDocument()
ontology.load("path/to/SPDocument-ontology.owl")

# Extract datasets
data = ontology.extract()

# Access specific relations
term_types = data.term_typings
taxonomic_relations = data.type_taxonomies
non_taxonomic_relations = data.type_non_taxonomic_relations