Molecules And Materials Basic Ontology (MAMBO)¶
MAMBO (Molecules And Materials Basic Ontology) is a domain ontology for molecular materials, designed to facilitate the retrieval and integration of structured information regarding molecular materials and their applications. The ontology provides a comprehensive framework for representing molecular structures, properties, and interactions, supporting both computational modeling and empirical research. MAMBO encompasses key entities such as molecules, materials, devices, and processes, and models relationships between these entities to capture the complexity of molecular systems. The ontology employs a class-based modeling approach, defining classes for different types of molecules, materials, and devices, along with properties to describe their characteristics and interactions. Hierarchies are used to organize classes into categories, enabling efficient data retrieval and analysis. MAMBO supports the integration of data from computational simulations and experimental studies, promoting interoperability and data-driven research in materials science. Typical applications of MAMBO include the development of new materials for electronic devices, the optimization of molecular structures for specific applications, and the integration of diverse datasets to support advanced analytics and knowledge discovery. By providing a standardized vocabulary and framework, MAMBO enhances collaboration and innovation in the field of molecular materials.
Example Usage: Annotate a dataset of molecular materials with MAMBO terms to specify molecular structures, properties, and interactions, enabling semantic search and integration with computational modeling tools and experimental databases.
Metrics & Statistics¶
Total Nodes |
166 |
Total Edges |
624 |
Root Nodes |
1 |
Leaf Nodes |
7 |
Classes |
57 |
Individuals |
0 |
Properties |
104 |
Maximum Depth |
1 |
Minimum Depth |
0 |
Average Depth |
0.50 |
Depth Variance |
0.25 |
Maximum Breadth |
1 |
Minimum Breadth |
1 |
Average Breadth |
1.00 |
Breadth Variance |
0.00 |
Term Types |
0 |
Taxonomic Relations |
39 |
Non-taxonomic Relations |
0 |
Average Terms per Type |
0.00 |
Usage Example¶
Use the following code to import this ontology programmatically:
from ontolearner.ontology import MAMBO
ontology = MAMBO()
ontology.load("path/to/MAMBO-ontology.owl")
# Extract datasets
data = ontology.extract()
# Access specific relations
term_types = data.term_typings
taxonomic_relations = data.type_taxonomies
non_taxonomic_relations = data.type_non_taxonomic_relations